PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000418900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 159aa    MW: 17428.7 Da    PI: 8.7352
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000418900genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.24.1e-29463159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                   ++Dgy+WrKYGqK+ ++++ pr+YY+C++a +Cpvkkkv++sae+p v++ tYegeHnh 
  MDP0000418900  4 VKDGYQWRKYGQKVTRDNPSPRAYYKCSFApSCPVKKKVQKSAENPCVLVATYEGEHNHM 63
                   58***************************99****************************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081126.544165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-28265IPR003657WRKY domain
SuperFamilySSF1182901.57E-24365IPR003657WRKY domain
SMARTSM007742.4E-31464IPR003657WRKY domain
PfamPF031067.2E-24562IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MQIVKDGYQW RKYGQKVTRD NPSPRAYYKC SFAPSCPVKK KVQKSAENPC VLVATYEGEH  60
NHMHPESRAE VTLIAPVSPN QNQPPISVSP SMAKRSAPPT FSCDINRISP NTTMCPQETE  120
AATFQQFLVQ QMASSLTQDP NFTSALAAAI SGRISDHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A1e-211651477Probable WRKY transcription factor 4
1wj2_A1e-211651477Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.257179e-79leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6273010.0AB627301.1 Malus x domestica mRNA, microsatellite: MEST165, clone: SAM01_21_E10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008365552.11e-116PREDICTED: probable WRKY transcription factor 60
RefseqXP_008378959.11e-114PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 40
SwissprotQ9SK333e-49WRK60_ARATH; Probable WRKY transcription factor 60
TrEMBLV9MHA73e-92V9MHA7_9R
TrEMBLV9MHD34e-92V9MHD3_MALDO; WRKY transcription factor 40b
STRINGPOPTR_0018s02470.11e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97334115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25000.12e-50WRKY DNA-binding protein 60